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The configuration model for BarabasiAlbert networks
Applied Network Science volume 4, Article number: 32 (2019)
Abstract
We develop and test a rewiring method (originally proposed by Newman) which allows to build random networks having preassigned degree distribution and twopoint correlations. For the case of scalefree degree distributions, we discretize the tail of the distribution according to the general prescription by Dorogovtsev and Mendes. The application of this method to BarabasiAlbert (BA) networks is possible thanks to recent analytical results on their correlations, and allows to compare the ensemble of random networks generated in the configuration model with that of “real” networks obtained from preferential attachment. For β≥2 (β is the number of parent nodes in the preferential attachment scheme) the networks obtained with the configuration model are completely connected (giant component equal to 100%). In both generation schemes a clear disassortativity of the small degree nodes is demonstrated from the computation of the function k_{nn}. We also develop an efficient rewiring method which produces tunable variations of the assortativity coefficient r, and we use it to obtain maximally disassortative networks having the same degree distribution of BA networks with given β. Possible applications of this method concern assortative social networks.
Introduction
In spite of the large number of existing studies on BarabasiAlbert (BA) networks, their twopoint correlation functions have been completely analysed only recently by Fotouhi and Rabbat (2013), who have given the full expressions of the conditional probabilities P(hk) in the large network limit for any value of the parameter β (the number of parent nodes in the preferential attachment process).
Concerning the assortativity properties of BA networks, in previous work some estimates of the Newman coefficient r were found (Newman 2002). According to these estimates, for large N (number of nodes), r vanishes as − ln2N/N. It was therefore generally believed that BA networks are almost uncorrelated, and numerical simulations appeared to confirm this. However, more recent asymptotic estimates (Fotouhi and Rabbat 2018; Bertotti and Modanese 2019) yield a different result: r vanishes only as \(\ln ^{2} N/\sqrt {N}\) for large N. It should be recalled that for real networks with the same scalefree exponent (γ=3), the r coefficient is always small in absolute value, so even this small total disassortativity is significant.
By computing the function k_{nn}(k) of BA networks (average nearest neighbor degree of a node of degree k) we have shown in (Bertotti and Modanese 2019) that it is strongly decreasing for small k and slowly increasing for large k. This means that the total slight disassortativity measured by the r coefficient is in fact the result of an unexpected mixed assortative/disassortative behavior of these networks.
This peculiar structural property may have an influence on the dynamics on BA networks. In particular, we have shown in (Bertotti and Modanese 2019) for the Bass innovation diffusion model on a network, that finite BA networks exhibit the fastest diffusion among scalefree networks with exponent γ=3. This result was obtained by solving numerically the coupled nonlinear differential meanfield equations of the model (Bertotti et al. 2016; Vespignani 2012) (a system of n equations for a network with maximum degree n) and finding the time of the diffusion peak in dependence on the network structure. Comparisons were made between BA networks, uncorrelated networks, disassortative networks built according to a method by Newman (2003) and assortative networks built with a recipe we have recently developed (Bertotti et al. 2016). Results are displayed in Table 1. The networks employed had typically maximum degree n=10^{2}, which corresponds to N≈10^{4} nodes. It turns out that the fastest diffusion process occurs on BA networks with β=1. Note that the peak diffusion time in the Bass model is, unlike in the SI model, independent from the initial conditions, and gives therefore useful information on the diffusion features of the network.
In this work we use for the first time the correlation functions found in (Fotouhi and Rabbat 2013) in order to build in the configuration model networks which display these peculiar correlations, and investigate their properties.
The configuration model (Newman 2010) is a method for the generation of random networks having an assigned degree distribution. It is therefore a powerful extension of the original concept of random network introduced by Erdös, and has been extensively studied with analytical and numerical methods, especially for the case of scalefree networks. Classical results concern the conditions for the formation of a giant component (Molloy and Reed 1995) and its clustering features.
Some authors have also raised the question of whether it is possible to generate networks with preassigned correlations. Newman has proposed for this purpose in (Newman 2003) a method based on a degreepreserving rewiring procedure; more recently, the issue has been also discussed by Bassler et al. (2015) and by Boguna et al. (Boguná and PastorSatorras 2003). The practical applications of these ideas have been, until now, rather limited. Yet, from the applicative point of view the possibility of an efficient generation of networks with given correlations is quite attractive.
For example, social networks are known to be generally assortative, and in order to study diffusion processes on these networks in the meanfield approximation it is very useful to construct mathematically certain families of assortative correlation matrices (Bertotti et al. 2016). If it is possible to produce explicit realizations of networks with such correlations, these can be used to obtain a further characterization of the diffusion process, possibly also with agentbased methods etc. In fact, an assortative rewiring has been proposed already in (Newman 2003) and in (XulviBrunet and Sokolov 2004), but with some limitations; in the first case the assortative matrices employed do not generally satisfy a positivity criterium, in the second case no correlations matrices are employed, and the rewiring criterium works on an heuristic basis.
With the above applications in mind, our aim in this work is to use the correlations matrices of BA networks and the rewiring procedure by Newman to test under controlled conditions the configuration model with preassigned correlations. In fact, one of the features of BA networks which makes them so popular and widely used for the simulation of real networks is that they can be readily generated via a preferential attachment procedure. Since their correlation matrices are now available, by reconstructing them in the configuration model we can compare the features of the resulting ensemble of networks with those of the networks produced by preferential attachment. As we shall see, this gives useful insights on the method in general.
The rest of the paper is organized as follows. In “The configuration model with Newman rewiring” section we discuss the mentioned rewiring procedure which generates by using the configuration model an ensemble of networks having as prescribed correlations the correlations of BA networks. Some features of the networks of the ensemble obtained in this way are then discussed, including the behavior of their average nearest neighbours degree function k_{nn}(k). The rewiring procedure is also adapted in “Maximally disassortative networks with scalefree exponent 3” section to generate maximally disassortative scalefree networks having the same exponent as the BA ones. “Conclusion” section concludes by discussing the results and some potential followups. Finally, in the Appendix some definitions and the expressions for the case of BA networks of some quantities used throughout the paper are recalled.
The configuration model with Newman rewiring
Discretized degree distribution
Given the total number N of nodes in the network, suppose that we want to assign to each node a degree D_{1},…,D_{N} according to a degree distribution with the form of a power law P(k)=c_{γ}/k^{γ}. As discussed in (Boguña et al. 2004) the maximum node degree n present in the network can be obtained from N through the relation
This means that n is the degree above which one expects to find at most one node. For the case of γ=3, we obtain \(n \simeq \sqrt {N}\).
In practice one can set, for finite networks, P(k)=0 for k>n, and normalize P(k) accordingly, by defining
Then one can define
as the average number of nodes with degree k present in the network, where “Round” denotes rounding to the nearest integer.
In this way, however, we find that N_{k} becomes zero when k>n_{1}≃(2Nc_{γ})^{1/γ}, which is considerably smaller than the value n given by the integral criterium (1). The reason is that we are essentially discarding the fractional expectation values found from (3), instead of cumulating them as in (1).
This procedure has been employed in the influential paper (Aiello et al. 2000) in order to generate scalefree networks with the configuration model. This work, however, predates Ref. (Boguña et al. 2004) and the widespread use of preferential attachment for the generation of scalefree networks, especially of the BA type. Actually it is immediate to realize, by plotting the degree distribution of finite BA networks generated via preferential attachment, that a random succession of hubs in the degree interval k∈[n_{1},+∞] is always present. These hubs play an important role in several dynamical processes on the network.
Therefore we shall use in the following, to obtain the discretized degree distribution N_{k}, not the simple recipe (3) but one of three different improvements of it, which give practically equivalent results for the networks considered in this work:
(1) “Cumulation” method. In this method, for k>n_{1} the values of P(k)N are cumulated, as k increases, until their sum exceeds 1; at this point, one hub is created, the cumulation procedure starts again, and so on.
(2) “Random hubs” method. The idea is the following: if the average number of nodes with degree k is smaller than 1, say NP(k)=X<1, then a node with this degree will be created in each realization with probability X. Extending the procedure to all degrees, a random variable ξ∈(0,1) is generated for each value of k, and then denoting by Int(NP(k)) the integer part of NP(k) and by Dec(NP(k)) its decimal part, one sets N_{k}=Int(NP(k)) if ξ>Dec(NP(k)) and N_{k}=Int(NP(k))+1 if ξ<Dec(NP(k)). The number of nodes is therefore not fixed, with random variations of 1 for each degree (in particular, with values 0 or 1 in the tail of the distribution), such to respect the degree distribution in an ensemble average.
(3) The most general way for generating the degrees of the nodes is to use a probability transformation method. For this one needs to define first a vector \(F_{k}={\sum \nolimits }_{j=1}^{k} P(j), F(0)=0\), where k=1,…,n and P(j) denotes the normalized degree distribution. The values of F_{k} define breakpoints of the unit interval (0,1). After generating a random number ξ in this interval, a new node is introduced with degree k if F_{k−1}<ξ<F_{k}, and the procedure is repeated N times. This method has the advantage of allowing the generation of exactly N nodes.
Description of the wiring and rewiring algorithm
After a degree D_{i} has been assigned to each candidate node (or “stub”) i, in the classical configuration model a certain number of links is randomly attached to the stubs, until each stub reaches its planned degree. In our algorithm this wiring procedure is not random, but partially deterministic. This is more efficient and makes sense because the wiring is followed by a massive random rewiring phase (see below) which preserves the degrees of the nodes but makes the correlations close, in an ensemble average, to the “target” correlations \(e^{0}_{jk}\).
The wiring procedure starts from Node 1, whose degree D_{1} is the largest in the network. Among the remaining ones, D_{1} distinct nodes are chosen randomly and connected to it. For each of the nodes chosen, the number of available stubs is decreased by one. Then the same steps are repeated for Node 2 and so on, with exclusion of nodes whose stubs are all already connected. The final product will be a list of L links of the form (a,b), where a and b denote two nodes (a,b=1,…,N). Provided N is even, we have
For the rewiring according to the Newman procedure, we choose at random in the list of the links two links (a,b) and (c,d). Denote with A,B,C,D the excess degrees of these nodes and define the quantities
where \(e^{0}_{jk}\) is the “target” correlation matrix that we want to approach in the rewiring. Then

If E_{1}=0 the rewiring is performed, i.e., the links (a,b),(c,d) are replaced by (a,c),(b,d).

If E_{1}>0, we define P=E_{2}/E_{1} and then generate a random number ξ∈(0,1).

If P≥1, the rewiring is performed.

If P<1 and ξ<P, the rewiring is performed.
Then another couple of links is chosen and the same steps are repeated.
The ergodicity property of this rewiring procedure has been discussed in (Newman 2003). As empirical criterium for the attainment of equilibrium we set an average of 10^{3} rewirings per node. The fraction of successful rewirings for the present case of BA networks turns out to be larger than 0.5. Therefore, 10^{7} can be taken with a safe margin as a total number of attempts necessary for our trial networks with N=2500. This can be accomplished in less than 1 second on a normal machine. The time scales linearly with the size of the network. We chose to report here on the size N=2500 also for practical reasons of visualization of the network and of its function k_{nn}(k) (see below, “Function k_{nn}(k) of BA networks obtained with the configuration model” section).
The N parameter and the number of rewirings given above are only one of many possible safe choices and do not substantially affect the properties observed in the networks. Concerning the choice of the rewiring algorithm itself, we are not aware of any alternative to the Newman algorithm, if the purpose of the rewiring is to obtain networks having (in a statistical sense) predefined twopoint “target” correlations.
Properties of BA networks obtained in the configuration model
For a BA network with β=1 (in the following also denoted as BA1), the correlation P(11) is zero, according to the general formulas of Fotohui and Rabbat. This particular case is also obvious if one considers the totallyconnected growth process of the network as obtained in the preferential attachment scheme: no node of degree 1 can be connected to a node of the same degree, otherwise an isolated pair would be formed.
In the configuration model applied to scalefree networks with random rewiring, isolated pairs do usually form, and in large numbers, with the effect of a considerable reduction of the giant component. However, when we apply the configuration model to the degree distribution of a BA1 network, followed by a Newman rewiring with target correlations \(e^{0}_{jk}\) of the BA1 type (obtained from the P(hk) as in Eq. (10) in the Appendix, the resulting number of isolated pairs is always zero, because the condition P(11)=0 is enforced in an effective way. The size of the giant (connected) component is about 0.69±0.01. Most of the disconnected small components are triples (Fig. 1), whose origin is quite interesting. The correlation P(21) is non zero for BA1 networks. In fact, in the growth process with preferential attachment, connected tails of variable length can arise, in which the last node contributes to the correlation P(21) and the intermediate nodes contribute to the correlation P(22). When the network is reconstructed in the configuration model, isolated triples arise, because the nonvanishing conditional probability P(21) allows to attach two nodes of degree 1 to a central node of degree 2 “without knowing” that on the other side of this central node there is no connection to the giant component. This is a simple demonstration of the general fact that the knowledge of the degree distribution and twopoint correlations is insufficient to completely characterize a network.
BA degree distributions with β>1 (Fig. 2) the Newman rewiring always generates a fully connected network (giant component equal to 100%). This has little to do with the correlations, but is due instead to the large average connectivity of these degree distributions, namely 〈k〉=2β. For uncorrelated networks, it is known that the size of the giant component in the configuration model grows quickly as 〈k〉 grows (Newman 2010). We can readily check this with our algorithm, for example, through an initial wiring with the BA2 degree distribution, followed by a Newman rewiring with target correlations \(e^{0}_{jk}=q_{j}q_{k}\).
Function k _{nn}(k) of BA networks obtained with the configuration model
A possible way to check if the twopoint correlation functions of the BA networks have been correctly reproduced in the configuration model is to plot the function \(k_{nn}(k)={\sum \nolimits }_{h=1}^{n} hP(hk)\), also known as average nearest neighbours degree distribution. Due to the partial summation in its definition, this function depends only on one argument and is therefore easier to analyse than the full P(hk); moreover, it has a direct qualitative interpretation in terms of assortativity and disassortativity of the network. For an uncorrelated network it is constant and equal to 〈k^{2}〉/〈k〉. By computing the k_{nn}(k) function of the BA correlations given by Fotouhi and Rabbat, we have shown that it is decreasing at small k, reaching a minimum for a k_{min} almost proportional to n (k_{min}≃0.2n+20 in the range 50≤n≤500), ad then it is slightly increasing for large k.
This behavior is reproduced in the configuration model but, as expected, with large fluctuations, if one plots k_{nn} for different BA networks belonging to the statistical ensemble obtained with the Newman rewiring. Graphically one can visualize such an ensemble with a “cloud” plot (see Fig. 3). This plot is completely analogous to a cloud plot of the k_{nn} functions for BA networks obtained at random with the preferential attachment algorithm.
Note that the degrees of the largest hubs in Fig. 3 are randomly generated according to the “random hubs” method described in “Discretized degree distribution” section. This is very similar to what one obtains using a standard randomized preferential attachment algorithm: if one analyzes a relatively small number of realizations, one will find that the largest hubs present have variable degrees, and most of the degrees in the tail of the degree distribution are actually missing.
Alternatively to the cloud diagram, one can compute the average of the k_{nn} function over a rewiring ensemble, and compare it to the \(k^{FR}_{nn}\) obtained with the P(hk) correlations of Fotouhi and Rabbat. In this case, the degrees of the largest hubs need to be fixed, otherwise the average for large k is meaningless due to the missing hubs in each realization. Therefore one must employ for this comparison the “cumulated probability” method of “Discretized degree distribution” section. A typical result is shown in Fig. 4. Even with a small ensemble (e.g. 40 networks, in the figure) 〈k_{nn}〉 compares well with \(k^{FR}_{nn}\).
The assortativity coefficient r of the configuration model ensemble, which condensates the information on the correlations into a single number, is for the examples given (BA2, n=80), 〈r〉=−0.031, with standard deviation σ_{r}=0.028. The value of r computed from the FR correlations is larger in absolute value: r_{FR}≃−0.10. The difference can probably be explained as due to the fluctuations.
Maximally disassortative networks with scalefree exponent 3
We have seen that finite BA networks are moderately disassortative, and not uncorrelated as frequently stated in the literature. A natural question arises: how relevant is this disassortativity? For scalefree networks with the same exponent (γ=3) what is the lowest possible value of r attainable? And what is the aspect of networks with such minimum r, compared to BA networks? We recall that the r coefficient of realworld scalefree disassortative networks is rarely more negative than −0.15, see (Bertotti and Modanese 2019), even if in general the r coefficient of biological and technological networks can be smaller, especially for small size networks. For example, the proteinprotein interaction network of H. pylori (N=709) has r=−0.243 and the proteinprotein interaction network of C. elegans (N=2386) has r=−0.183. This fact has important consequences for the spectra of the networks (Jalan and Yadav 2015).
The configuration model offers a powerful tool for the exploration of such issues. In this section we shall show that it is possible to do an efficient rewiring of a network with the BA degree distribution which decreases the value of r, and consistently yields a minimum value which is approximately three times the value of the r coefficient of the corresponding BA network. For instance, for a maximum degree n=80 and β=2 we have r≃−0.32. This makes sense for BA networks with β≥2, because for β=1 the giant component obtained from the configuration model is not complete.
With the pseudorandom wiring process described in “Description of the wiring and rewiring algorithm” section we obtain a network in the form of a list of L links. We shall now perform on this network a rewiring process with the aim of increasing or decreasing its assortativity coefficient r until respectively a maximum or minimum are reached. Each elementary rewiring step works as follows.
(1) Two links are chosen at random in the list. Suppose the first link is between nodes a and b and the second between nodes c and d (a,b,c,d=1,…,N). Let the excess degrees of these nodes be respectively A,B,C,D.
(2) The links [a,b] and [c,d] are replaced by new links [a,c] and [b,d], provided a≠c and b≠d (in order to avoid the formation of loops). This rewiring step causes a change in the elements of the e_{jk} matrix for which j or k coincide with A,B,C or D. We recall that after the wiring process the e_{jk} matrix is computed by counting in the node list, for each fixed couple of values j,k, how many links are between a node with degree j and one with degree k, and dividing by 2L; nodes with j=k are counted twice. The variations after one rewiring step are
The variation of the Newman assortativity coefficient r after one rewiring step is due to the presence in the definition of r (Eq. (12) in the Appendix) of the sum \({\sum \nolimits }_{j,k=0}^{n1}jke_{jk}\), which changes as
On the other hand, the sum \({\sum \nolimits }_{j,k=0}^{n1}jkq_{j}q_{k}\) does not change in the rewiring, because the distribution q_{k} of the excess degrees does not change (it is a degreepreserving rewiring). For the same reason, the (positive) denominator in the definition of r is also unchanged. The variation of r is therefore
The variation is accepted when r>0, if we are looking for the maximum assortativity, or viceversa. The algorithm performs a large number of rewirings, for instance 10^{5} rewirings for a network with ∼ 10^{3} nodes; then r is visualized and another 10^{5} rewirings are performed, and so on, until the value of r stabilizes (this can be checked visually or through some automated criterium; the convergence is usually quick, and we shall discuss in further work the issue of possible local maxima and minima and how to exclude them).
In Fig. 5 the function k_{nn} which arises from one realization of a maximally disassortative network obtained with this method is compared with the corresponding k_{nn} of a BA2 network.
The values of r obtained will depend (for fixed N) on the degree distribution, therefore on the scalefree exponent γ in the case of a pure power law, or on β for a “BAlike” degree distribution P(k)=2β(β+1)/[k(k+1)(k+2)]. We use this degree distribution as a variation of the pure power law γ=3, in order to investigate the role of the details of the degree distribution at small k; we recall that these details influence the average degree and may have a strong impact, for instance, on the giant component of random networks in the configuration model (Newman 2010).
Conclusion
The degree distribution, correlation functions and assortativity character are distinctive features of any network, and affect in an essential way the dynamics processes which take place on it. It is therefore desirable to develop methods and algorithms which generate networks where such characters are preassigned; this allows to study the resulting networks in detail and to simulate dynamical processes on them.
The configuration model (Newman 2010; Barabási 2016) in its traditional form allows to generate uncorrelated networks with assigned degree distribution and has been widely investigated – even though, for the scalefree case, defining the discretized degree distribution of the highdegree “stubs” in accordance with the integral criterium of DorogovtsevMendes is not trivial (a point that we also fix in this paper, before addressing the correlations).
An improvement of the configuration model through a rewiring algorithm that generates an ensemble of networks with preassigned correlations has been proposed by Newman in his seminal paper on assortative mixing (Newman 2003). In that paper Newman applied his rewiring algorithm to scalefree networks of the disassortative kind (and also of the assortative kind, in a small range of the r coefficient). No further applications of this method have been published, to our knowledge; degreepreserving rewirings have been often used (XulviBrunet and Sokolov 2004; Van Mieghem et al. 2010; D’Agostino et al. 2012), but not in connection with the correlation functions. Therefore the recent full computation of the correlations for BA networks (Fotouhi and Rabbat 2013) offers the possibility of a new test of the Newman rewiring by comparison with the BA networks generated directly via the preferential attachment scheme.
In particular, we have tested numerically (and we plan to extend this work to other classes of correlation functions, besides those of BA networks): (a) the giant connected component of the networks obtained; (b) the average of the function k_{nn} in their ensemble; (c) the fluctuations of k_{nn} in the ensemble.
Furthermore, we have developed a new rewiring criterium which allows to obtain in an almostdeterministic way (i.e., with very small fluctuations in the resulting ensemble) networks having maximum or minimum values of the r assortativity coefficient.
Finally, with this method it is also possible to focus on features related to specific components of the correlations. For instance, we observe that in the configuration model of BA1 networks the isolated couples are completely absent, thanks to the vanishing of the e_{00} correlation; in a maximally disassortative network with BA2 degree distribution all the largest hubs are connected exclusively with nodes of degree 2, etc. These features have been obtained in trial networks with 2500 nodes, and therefore with a statistical significance of the order of 1 part in 10^{3}. In future computations we plan to increase the accuracy and especially to address the case of assortative networks.
Appendix
We recall here some formulae which have been used throughout the paper and in the simulations.
Whereas P(k) expresses the probability that a randomly chosen node of a network has degree k, the degree correlation P(hk) expresses the conditional probability that a node with degree k is connected to one with degree h.
In particular, for a BarabasiAlbert network with parameter β≥1 corresponding to the number of parent nodes in the preferential attachment scheme, the degree distribution is given (Barabási 2016) by
and the degree correlations are given by
with \(B^{m}_{j}\) denoting the binomial coefficient
The expressions in (10) have been established by Fotouhi and Rabbat in (Fotouhi and Rabbat 2013) and have been employed by us, here and in (Bertotti and Modanese 2019), after a suitable normalization, due to the fact that we deal with network with a finite maximal degree.
As for the assortativity coefficient r, its expression is given (see e.g. (Newman 2002) or (Bertotti and Modanese 2019)) by
where e_{kh} denotes the probability that a randomly chosen link connects nodes with excess degree k and h (the excess degree of a node being its total degree minus one), and q_{k} and \(\sigma ^{2}_{q}\) are given by
and
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Bertotti, M.L., Modanese, G. The configuration model for BarabasiAlbert networks. Appl Netw Sci 4, 32 (2019). https://doi.org/10.1007/s4110901901521
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DOI: https://doi.org/10.1007/s4110901901521