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How do urban mobility (geo)graph’s topological properties fill a map?
Applied Network Science volume 4, Article number: 91 (2019)
Abstract
Urban mobility data are important to areas ranging from traffic engineering to the analysis of outbreaks and disasters. In this paper, we study mobility data from a major Brazilian city from a geographical viewpoint using a Complex Network approach. The case study is based on intraurban mobility data from the Metropolitan area of Rio de Janeiro (Brazil), presenting more than 480 spatial network nodes. While for the mobility flow data a lognormal distribution outperformed the power law, we also found moderate evidence for scalefree and small word effects in the flow network’s degree distribution. We employ a novel opensource GIS tool to display (geo)graph’s topological properties in maps and observe a strong traffictopology association and also a fine adjustment for hubs location for different flow threshold networks. In the central commercial area for lower thresholds and in high population residential areas for higher thresholds. This set of results, including statistical, topological and geographical analysis may represent an important tool for policymakers and stakeholders in the urban planning area, especially by the identification of zones with few but strong links in a real datadriven mobility network.
Introduction
Urban mobility data are important to several areas, from traffic engineering to the analysis of outbreaks and disasters. Many studies explore patterns, applicability, and limitations on urban mobility (Gonzalez et al. 2008; Song et al. 2010; Simini et al. 2012; Guo et al. 2012; Wang et al. 2012; Louail et al. 2015). Another common thread among these studies is the importance of spatial structure. In this work, the spatial structure of a actual databased mobility complex network is explored.
There are several classical approaches to the analysis of urban mobility data, from mechanical models to statistical ones (Costa et al. 2017; Barbosa et al. 2018). According to Barat and Cattuto (2013), in many cases, urban mobility information finds a convenient representation in terms of complex networks. The complex network approach emerges as a natural mechanism to handle mobility data, taking areas as nodes and movements between origins and destinations as edges. However, there are difficulties in incorporating human mobility into models from both technical and ethical perspectives (Balcan et al. 2009). At the intraurban scale, this difficulty is magnified due to the complex structure of the urban territory. Thus, a general approach for handling geographical data is needed.
As presented in Barthélemy (2011), a review about spatial network, several complex systems are very often organized as networks where their elements (nodes and edges) are embedded in (geographical) space and topology alone does not contain all the information important for understanding processes and propose scientific and technological developments. A geographical approach for complex systems analysis is especially important for mobility phenomena (Barthélemy 2011).
Santos et al. (2017) proposed the (geo)graphs approach, in which a (geo)graph is defined as a graph in which the nodes have a known geographical location, and the edges have spatial dependence. (Geo)graphs provide a simple tool to manage, represent and analyze geographical complex network.
In this paper we explore the spatial structure of an actual databased mobility complex network.
In particular, we applied a set of procedures to use origindestination data (OD data), originally from traffic engineering, to recover useful information about mobility. OD data represent daily travels between zones on a region, especially interesting for the intraurban scale. According to Estrada (2012), social proximity refers to actors that belong to the same space of social relations. And OD data can be seen as a “social” relation between origin and destination areas.
The central question in this paper is: how to recover useful information from urban mobility data considering its intrinsic spatial properties?
In several previous works (Song et al. 2010; De Montis et al. 2007; Chowell et al. 2003; Soh et al. 2010; Brockmann et al. 2006), the powerlaw behaviour of human mobility models and data were explored.
In this work, as a first step, we extend the method of Clauset et al. (2009) of distributions analysis by employing a Bayesian approach and computing Bayes factors. So, we use the mobility data to construct mobility networks and calculate topological properties. Finally, we return to the geographical domain representing and analyzing the topological measures.
The traffictopology analysis is a traditional object of research in the mobility network literature (Chowell et al. 2003; Soh et al. 2010; De Montis et al. 2007). However, there is an open question: how is the hub’s strength distributed among its links? In this work, we propose a complementary traffictopology analysis with an explicit spatial meaning.
The network connection criteria applied in this work is similar to those in other studies in the literature (Chowell et al. 2003; De Montis et al. 2007; Soh et al. 2010), who also investigated flow weights distribution and the traffictopology correlations. However, in contrast to those studies, we test different distributions and explore the spatial aspect of the results.
This paper is organized as follows: “Material and methods” section contains the data and methods of this investigation, in particular the fitting of power law distributions (“Power law analysis” section), power law regression (“Power law regression” section) and geographs (“(Geo)graph tools” section). Results and discussion are presented in “Results and discussion” section. Finally, some concluding remarks and perspective of future work are drawn in “Conclusions and perspectives” section.
Material and methods
Mobility data
The Metropolitan Region of Rio de Janeiro (MRRJ) encompasses 20 cities, for a total of 10,894,756 inhabitants. It is the second largest metropolitan area in Brazil, the third in South America and the 20th in the world.
To facilitate mobility studies, the region is divided into a set of traffic zones (TZ). For this specific work, we consider a set of 485 traffic zones, in which each TZ has appeared at least once as a source or as a destination in the set of travels of more than 99 thousands interviewed people in a OriginDestination Survey (Companhia estadual de engenharia de transporte e logistica et al. 2010). From a network perspective, each TZ is represented by a node.
The original data (Companhia estadual de engenharia de transporte e logistica et al. 2010) consists of a list of travels, each one with an origin TZ and a destination TZ. This dataset is summarized into a flow matrix, in which each element f(i,j) records the number of travels between TZs i and j, in both directions (i.e. the matrix is symmetric).
The drivingmode data used here takes into account: car, bus or motorcycle, representing more than 56% of the total number of travels.
Power law analysis
We extend the approach of Clauset et al. (2009) by employing a Bayesian approach to fitting and comparing distributions for the data presented in this article. Clauset et al. (2009) proposed to select the lower threshold x_{min} after which the data follows a power law regime by minimizing the KolmogorovSmirnov (KS) goodnessoffit statistic. We adopt their procedure to estimate x_{min} and then proceed by assuming x_{min} is fixed and known. Parameter estimation and model selection for various distributions are made assuming the same x_{min} for all scenarios.
Let x={x_{1},x_{2},…,x_{N}} denote the observed data. The power law distribution has probability density function (p.d.f.):
We complete the model specification with a prior distribution π(α)∝1/(α−1), which leads to a proper posterior distribution p(αx,x_{min}).
The second distribution we analyze is the stretched exponential (Weibull, see Clauset et al. Table 1), with p.d.f
We employ Gamma priors on the parameters β and λ:
The third and final distribution we consider in this study is the lowertruncated lognormal distribution:
For the analysis of this distribution we choose a normal (Gaussian) prior for μ with mean 1 and standard deviation 5 and a Gamma prior for σ with a=b=1. Notice we parametrize the normal (and lognormal) distribution in terms of mean and standard deviation.
We estimated the parameters of these distributions using the dynamic Hamiltonian Monte Carlo (HMC) algorithm implemented in the Stan probabilistic programming language (Carpenter et al. 2017) through the rstan package (Stan Development Team 2018) of the R programming language (R Core Team 2018), version 3.5.1. We ran four chains of 2000 iterations and checked convergence by making sure the splitRhat statistic was below 1.01. Monte Carlo standard errors (mcse) were below 1% of the posterior standard deviations for all estimates reported in this paper.
To compare the fit of the distributions considered here to data we employ Bayes factors (Jeffreys 1935; Kass and Raftery 1995). Let \(\mathcal {M}_{0}\) and \(\mathcal {M}_{1}\) be two models or hypotheses one wants to test after observing data Y. The Bayes factor is defined as
quantifies the amount of support in favor of \(\mathcal {M}_{1}\) compared to \(\mathcal {M}_{0}\). For reasons of numerical stability, one usually computes lnBF_{01}. We employed the routines implemented in the bridgesampling R package (Gronau et al. 2017) to compute logmarginal likelihoods \(\ln p(Y \mathcal {M}_{i})\) which were then used to compute log Bayes factors.
Power law regression
A distinct goal to fitting a power law distribution is assessing whether two variables of interest are related according to a power law. Let w_{i} be the weight of node i and let d_{i} be its degree. We say that w and d are related by a power law if the relationship w∝k^{β} holds for β>0.
One routinely employed option to determine the exponent β from data is to fit the model:
by least squares – see e.g. De Montis et al. (2007). While this approach can often lead to good estimates, it is poorly suited to strictly positive data because it allows negative predictions.
A better model for strictly positive data like that analyzed here is the Gamma regression model with an identity link function:
where we parametrize the Gamma distribution in terms of a mean μ and a shape κ, with p.d.f.
This model allows for a strictly positive response variable whilst retaining directly interpretable parameters.
Finally, in the interest of completeness, we consider a lognormal model. While incorporating the positivity constraint in the data, it does not retain directly interpretability of the parameters, as estimates of the coefficients K and β pertain to the log scale. We note that an exponential transformation of the estimated parameters brings them to a comparable scale to the calculations from the two previous models.
To complete the specification of our Bayesian model, we place a Gamma(1, 1) prior on β and a Gamma(0.1, 0.01) on K. We fitted the three regression models for each weight threshold: 1, 1000 and 5000. In order to study the predictive performance of these three models (Gaussian, gamma and lognormal). We have employed leaveoneout (LOO) cross validation (Vehtari et al. 2017) in our experiments. It is important to note that in this paper we leave out individual graph nodes. In addition, we investigate model fit using the techniques described in Gabry et al. (2017) (see Supplementary figures). For these analyses we employed the brms package (Bürkner and et al 2017), using the same computational settings considered for the power law analysis above (four independent chains, checking split Rhat <1.01).
(Geo)graph tools
Among some important tolls in literature of geoinformatics is the MovingPandas (Graser 2019) and the OSMnx (Boeing 2017). The MovingPandas (Graser 2019) is a recent library for dealing with movement data, providing the user several functions and interfaces with Geographical DataBase Management Systems and Geographical Information Systems. The OSMnx (Boeing 2017) is a tool for creating and analysis of street networks under a simple, consistent and automatable paradigm. Even more specific to handle geographic network data is the (geo)graph package (GG) (Santos et al. 2017), applied in this work.
In the (geo)graph approach, a (geo)graph is defined as a graph in which the nodes have a known geographical location, and the edges have spatial dependence. So, the GG package allows the user work with the set of nodes as a pointtype shapefile and the set of edges as a linetype shapefile, very common file structures in geoinformatics.
In order to convert spatial networks to the GIS environment we propose the following workflow (Santos et al. 2017):

1.
To create a shapefile for the nodes using any GIS software. A point type shapefile for the nodes must be created. The shapefile must have a mandatory column of type integer named id, representing the id’s of the nodes. All the characteristics of the polygons/points will be associated to their respective points as attributes, including the geographic locations of the nodes.

2.
To create an adjacency matrix (0s and 1s) representing the connections between these nodes.

3.
Then, a line type shapefile representing the edges of the network is given as an output of our application. The pointtypeshapefile and the linetypeshapefile will have topological attributes of nodes and edges respectively.

4.
Then, a line type shapefile representing the edges of the network is given as an output of our application. The pointtypeshapefile and the linetypeshapefile will have topological attributes of nodes and edges respectively.
Results and discussion
Distribution of node weights
The flow values range between 0 and w_{max}=21228 number of people from an origin to one destination, with an average value of w_{ave}=33, which is considerably lower than w_{max}. This shows a high level of heterogeneity in the flow distribution. It is important to highlight that 12% of the travels have both origin and destination in the same node (TZ), i.e., are internal travels.
We fit three distributions to the mobility flow data (Fig. 1) and find that a truncated lognormal distribution with x_{min}=452 fits the data better than both a power law (log BF = 15) and a stretched exponential (log BF = 2). We report all marginal likelihoods and associated standard errors in the supplementary information. The estimated parameters of the lognormal are μ=1.24 with 95% credibility interval (−1.70,3.03) and σ=2.04(1.71,2.49). Interestingly, if one fails to consider other models, a power law model would be wrongly assumed to be the correct distribution of the data, as it gives an exponent firmly in the critical range 2<α<3, with estimated α=2.46 (2.42,2.48).
Furthermore, while not fitting the data better than the lognormal, the stretched exponential distribution provides a better fit than the power law (log BF = 13). The posterior means of the parameters were β=0.17(0.15,0.18) and λ=3.09(1.52,5.45). Overall these results show that (i) the flow data analyzed here do not follow a power law distribution, with a lognormal providing better fit and, (ii) the importance of considering alternative distributions into consideration when analyzing real data.
The powerlaw behaviour of mobility data was explored in several previous work (Song et al. 2010;De Montis et al. 2007;Chowell et al. 2003;Soh et al. 2010;Brockmann et al. 2006). In this work, for this case study, we have shown that for the mobility flow data a lognormal distribution outperformed the power law.
Traffictopology correlation
We also studied the traffictopology correlation, i.e., the relationship between a node’s strength (total weight), w_{i}, and its degree, d_{i}. In Table 1 we present the parameter estimates for each weight (flow) threshold.
We have found β values between the previous found in literature: 0.94 inChowell et al. (2003) and 1.8 inDe Montis et al. (2007).
The results show that there is a significant correlation between the weights and degrees, especially for higher thresholds. Also, the weights of the nodes grow slightly faster than their degrees (Barrat et al. 2004;De Montis et al. 2007). For the nonzero threshold (flow >1), however, we find that the posterior distribution for β includes the “null” hypothesis β=1. See Fig. 2 for the fitted regression lines, along with prediction intervals using the Gamma error structure.
From a statistical perspective, we find that a Gamma regression model provides better predictive ability (better LOO scores) compared to the usually employed Gaussian regression model. For example, for flow threshold 1, difference in LOOIC scores was 735 with standard error of 99, while for threshold 1000 the difference was 53 with standard error of 21. While in some settings the lognormal model yielded better fit, the differences in predictive ability are small enough to justify employing the Gamma model, for which estimates of K and β can obtained directly with no need for transformation.
Network properties
In Fig. 3 we present several properties (statistical indices) for flow networks considering distinct connection threshold values, i.e. minimum flow value for connecting a pair of zones.
The index <k> represents the expected value for the number of connections of a node for a specific connection threshold value. This value can be viewed as the network’s average connectivity. The minimum connection threshold value is 0, in this case we have a fully connected network (complete graph). For small nonnull connection threshold values, almost all zones are connect to the others, while for high values just a few pairs of zones remain. The index <c> is associated to the network’s transitivity: measures the average (over all nodes) connection probability of a pair of nodes connect to a same other node. On the other hand, the index <l> represents the average (over all nodes) number of edges in the smallest path between a pair of nodes, while the index D is the greatest shortest path length. A detailed description of complex network’s indexes can be founded inda F. Costa et al. (2007).
The minimum connection threshold value in order to get a noncomplete connected network is 4.7E−5: we connect every pair of nodes (origindestination) with at least one person going from this origin to this destination. In this case, there is only one connected component, with 485 nodes and 14.155 edges.
Then, we looked for the connection threshold associated to the greatest network’s diameter, in order to balance the weak and the strong edges for a single connection threshold: for this connection threshold we have not disconnected the largest connect component yet. We call this specific value as the Critical Connection Threshold (CCT). This critical connection threshold (CCT) is 0.06. In the CCT is 133 nodes in the largest connected component. After this value, the network’s diameter decreases when we increase the connection threshold. The CCT is between the thresholds 4.7E5 (Fig. 4) and 0.06 (Fig. 5).
In Table 2, we present the network’s properties for three selected connection thresholds: the smallest nonnull connection threshold, the CCT and one that delivers a fragmented (disconnected) network.
For the CCT, we highlight that for a random network with the same number of nodes and edges, the expected value for <c_{rand}> is 0.01 and <l_{rand}> is 20.5. Thus, there is a statistical small world effect in this network: <c> is greater than <c_{rand}> and <l> is smaller than <l_{rand}> (Watts and Strogatz 1998).
This means that it is often possible to find connections between pairs of zones already connected to a common zone (creating triangles in the network structure) and even for a pair of nodes where the directly flow between them is not so high there are some “shortcuts” on the mobility network, getting these zones closer (in a topological point of view).
Considering both the smallest nonnull and the critical connection threshold, we analyzed the degree distribution (Figs. 4 and 5). For the nonnull threshold (flow of at least one travel), the distribution presented in Fig. 4 is not well approximated by any of tested distributions, with the power law providing a marginally better fit (log Bayes factor against lognormal: 0.42). A bootstrap test of adequacy of the power law yielded a pvalue of 0.08, which means the power law is not suitable to describe the degree distribution for this threshold.
On the other hand, for the critical connection threshold (1273 trips between locations) shown in Fig. 5, the power law provides adequate fit (bootstrap pvalue: 0.745), although the support for the power law against a lognormal is weak (log Bayes factor against lognormal: 0.25).
These findings are in agreement with those of Alessandretti et al. (2017), who find that when the whole distribution of displacements is considered, i.e., when both small and large values are used in the fitting procedure, the lognormal outperforms the (Pareto) power law. Conversely, when restricting attention to large values, the power law provides better fit.
The connection threshold plays a central hole also on the (geographical) space. For small connection thresholds the networks’ hubs are in the central region of Rio de Janeiro and Niterói (the two most important cities in this metropolitan region)  Fig. 6, and for the critical connection threshold the hubs are located in zones belonging to Nova Iguaçu and Duque de Caxias (two of the most populous cities and with a large number of commuters)  Fig. 7.
When we compare our topological findings with some previous similar works, especially Chowell et al. (2003) and De Montis et al. (2007), it is possible to note that the RJ’s mobility network is bigger (in terms of number of edges) and presents high diameter.
These are expected results, as the study area is a Metropolitan Region, with several municipalities combining, daily, intense intercity travels (mainly for work and study) with intracity travels (for general purposes). Conforming the OriginDestination Survey for the Metropolitan Region of Rio de Janeiro, 21% of the travel were due working motivation, 16% for studying activities and 50% starts or ends at the traveler residence (Companhia estadual de engenharia de transporte e logistica et al. 2010).
On the other hand, a nonintuitive and important result is related to how the hub’s strength is distributed among its links. In this case study, the central area of MRRJ is connected with many other areas, however most of its connections are weak  associated to smallflow values. Even though Nova Iguaçu and Duque de Caxias do not connect to as many zones as does the central region, these zones have a set of a few pairs of nodes with high flow  a few but strong links.
Conclusions and perspectives
In this paper we address some aspects of the urban mobility phenomenon under a geographical point of view using a Complex Network approach. We applied the (geo)graph approach and tolls in order to recovery useful information from urban mobility data considering its intrinsic spatial proprieties. We found a high level of heterogeneity in the Metropolitan Region of Rio de Janeiro’s flow distribution. Considering the complex network analysis, we showed a statistical small world effect behaviour around the Critical Connection Threshold  set of connection thresholds that provide a network with maximum diameter.
An important point in the traffictopology analysis is how the hub’s strength is distributed among its links. We have shown that, in our case study, the central area of the region is connected with many other areas, however most of its connections are weak  associated to smallflow values. On the other hand, there are some zones do not connect to as many other zones as does the central region, but these zones have a few but strong (high flow) links.
From a methodological point of view, we also extended the method of Clauset et al. (2009) of distributions analysis by employing a Bayesian approach and computing Bayes factors. In addition, we show that a Gamma model for power law regression analysis leads to better fit, provides directly interpretable parameters and respects nonnegativity constraints in the data.
Among our perspectives is replicating our analysis on other datasets (from different cities) and compare the results, in attempt to capture some regional behaviour.
Availability of data and materials
The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request.
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Acknowledgements
The authors would like to thank Dr. Flavio Ianelli and Dr. Igor Sokolov for helpful discussions on mobility networks.
Funding
Funding: São Paulo Research Foundation (FAPESP), Grant Number 2015/501220 and DFGIRTG Grant Number 1740/2; FAPESP Grant Number 2018/062057; CNPq Grant Number 420338/20187; LMC is supported by a CAPES Postdoctoral Scholarship.
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Correspondence to Leonardo Bacelar Lima Santos.
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Lima Santos, L.B., Carvalho, L.M., Seron, W. et al. How do urban mobility (geo)graph’s topological properties fill a map?. Appl Netw Sci 4, 91 (2019). https://doi.org/10.1007/s4110901902117
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Keywords
 Complex networks
 Geographical information systems (GIS)
 (geo)graphs
 Traffictopology correlation