Table 4 Parameter estimates with 95% confidence interval for the yeast PPI network, from the EE algorithm
From: Testing biological network motif significance with exponential random graph models
Effect | Model 1 | Model 2 | Model 3 |
|---|---|---|---|
Edge | \(\mathbf {\underset{(-7.806, -7.709)}{-7.758}}\) | \(\mathbf {\underset{(-10.685, -10.650)}{-10.667}}\) | \(\mathbf {\underset{(-9.302, -9.262)}{-9.282}}\) |
AS | \({\underset{(-0.103, 0.007)}{-0.048}}\) | \(\mathbf {\underset{(1.013, 1.140)}{1.077}}\) | \(\mathbf {\underset{(0.550, 0.659)}{0.604}}\) |
A2P | – | \(\mathbf {\underset{(-0.090, -0.084)}{-0.087}}\) | \(\mathbf {\underset{(-0.062, -0.056)}{-0.059}}\) |
AT | \(\mathbf {\underset{(1.807, 1.907)}{1.857}}\) | \(\mathbf {\underset{(2.474, 2.548)}{2.511}}\) | \(\mathbf {\underset{(2.396, 2.467)}{2.432}}\) |
Match class | – | – | \(\mathbf {\underset{(0.315, 0.402)}{0.358}}\) |