Table 2 Similarity metrics of true and inferred Hi–C interaction networks on chromosome 4
From: Hi–C interaction graph analysis reveals the impact of histone modifications in chromatin shape
Species & Cell type | Similarity metric | True network | Inferred network |
|---|---|---|---|
Human ES | Modularity Newman (2006) | 0.73 | 0.67 |
Avg. clustering coefficient | 0.23 | 0.261 | |
Scale-free exponent | 2.072 | 2.254 | |
Assortativity | 0.141 | 0.121 | |
Diameter | 4 | 4 | |
Mouse ES | Modularity Newman (2006) | 0.65 | 0.60 |
Avg. clustering coefficient | 0.24 | 0.232 | |
Scale-free exponent | 2.12 | 2.087 | |
Assortativity | 0.115 | 0.122 | |
Diameter | 4 | 4 |