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Table 2 Similarity metrics of true and inferred Hi–C interaction networks on chromosome 4

From: Hi–C interaction graph analysis reveals the impact of histone modifications in chromatin shape

Species & Cell type Similarity metric True network Inferred network
Human ES Modularity Newman (2006) 0.73 0.67
Avg. clustering coefficient 0.23 0.261
Scale-free exponent 2.072 2.254
Assortativity 0.141 0.121
Diameter 4 4
Mouse ES Modularity Newman (2006) 0.65 0.60
Avg. clustering coefficient 0.24 0.232
Scale-free exponent 2.12 2.087
Assortativity 0.115 0.122
Diameter 4 4