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Table 1 The three kind SBML rules

From: From quantitative SBML models to Boolean networks

Rule type

Description

General form

Algebraic

Left-hand side is zero

\(0 = f(\varvec{W})\)

Assignment

Left-hand side is a scalar

\(x = f(\varvec{V})\)

Rate

Left-hand side is a rate-of-change

\(\mathrm {d}x/ \mathrm {d}t = f(\varvec{W})\)

  1. Let x be a variable, f a numerical function, \(\varvec{V}\) a vector of variables that does not include x, and \(\varvec{W}\) a vector of variables that may include x