Table 6 Parameter estimates with 95% confidence interval for the Alon E. coli regulatory network
From: Testing biological network motif significance with exponential random graph models
Effect | Model 1 | Model 2 | Model 3 | Model 4 |
|---|---|---|---|---|
Arc | \(\mathbf {\underset{(-8.368, -8.047)}{-8.208}}\) | \(\mathbf {\underset{(-7.830, -7.509)}{-7.670}}\) | \(\mathbf {\underset{(-5.535, -5.149)}{-5.342}}\) | \(\mathbf {\underset{(-8.664, -8.337)}{-8.500}}\) |
Sink | \(\underset{(-0.240, 6.830)}{3.295}\) | \(\mathbf {\underset{(0.306, 5.448)}{2.877}}\) | \(\underset{(-5.584, 4.330)}{-0.627}\) | \(\underset{(-1.512, 9.662)}{4.075}\) |
Source | \(\underset{(-1.770, 4.247)}{1.238}\) | \(\underset{(-1.063, 4.156)}{1.546}\) | \(\underset{(-3.084, 5.195)}{1.056}\) | \(\underset{(-1.683, 6.551)}{2.434}\) |
AltInStars | \(\mathbf {\underset{(0.943, 4.232)}{2.587}}\) | \(\mathbf {\underset{(0.555, 4.044)}{2.299}}\) | \(\underset{(-0.163, 3.392)}{1.614}\) | \(\mathbf {\underset{(0.630, 4.798)}{2.714}}\) |
AltOutStars | \(\underset{(-2.363, 0.362)}{-1.001}\) | \(\underset{(-1.885, 0.189)}{-0.848}\) | \(\underset{(-3.987, 1.717)}{-1.135}\) | \(\underset{(-2.300, 1.266)}{-0.517}\) |
AltTwoPathsT | \(\underset{(-0.638, 0.297)}{-0.170}\) | \(\underset{(-0.603, 0.272)}{-0.165}\) | \(\underset{(-1.376, 0.192)}{-0.592}\) | \(\underset{(-0.767, 0.267)}{-0.250}\) |
AltKTrianglesT | \(\mathbf {\underset{(0.798, 4.972)}{2.885}}\) | \(\mathbf {\underset{(1.025, 4.636)}{2.830}}\) | \(\mathbf {\underset{(0.722, 5.555)}{3.139}}\) | \(\mathbf {\underset{(0.548, 5.604)}{3.076}}\) |
Matching self | – | \(\underset{(-1.181, 0.280)}{-0.451}\) | – | – |
Loop | – | – | – | \(\mathbf {\underset{(1.949, 14.256)}{8.103}}\) |