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Fig. 6 | Applied Network Science

Fig. 6

From: Testing biological network motif significance with exponential random graph models

Fig. 6

Goodness-of-fit plots for the triad census of (a) the Alon E. coli regulatory network, Model 1 (Table 6), and (b) the Alon yeast regulatory network, Model 1 (Table 7). The observed triad counts are plotted in red with the triad counts of 100 simulated networks plotted as black boxplots. Because the triad counts (y-axis) are on a log scale, values of zero are omitted (observed zero counts shown as a red point on the bottom of the graph). In (a), for triad census class 030C (cyclic triad), the “box plot” consisting of a single median line for the simulated count represents a single (out of 100 simulations) occurrence of a nonzero count (of 1) for 030C

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