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Table 1 Experimental data sources for concentrations and related literature in AD. The concentrations parameters of individual genes involved in the cellular pathways of Alzheimer’s disease were adapted from experimental studies listed here.

From: Computational modelling of TNFα related pathways regulated by neuroinflammation, oxidative stress and insulin resistance in neurodegeneration

Protein/gene

Experiment

Region

Model

Concentration

References

Control

Diseased

TNFα

EIA assay

CSF

Humans

22.3 + 9.5 pg/ml

96.3 + 9.1 pg/ml

(Mogi et al. 1994)

Tau

Sandwich ELISA

CSF

Human (in vitro)

288 ± 160 pg/mL

728 ± 432 pg/mL

(Kester et al. 2009)

Aβ42

Sandwich ELISA

CSF

Human (in vitro)

845 ± 222 pg/mL

459 ± 170 pg/mL

(Kester et al. 2009)

Calcium

Inductively Coupled Plasma Mass Spectrometry (ICP MS)

Serum

Human (in vitro)

7.2 ± 2.6 μg/L

8.1 ± 2.1 μg/L

(Paglia et al. 2016)

APP

SDS PAGE followed by western blotting and densitometric scanning

Hippocampus

Human (in vitro)

0.98 ± 0.32 per 5.0 μg protein

1.92 ± 0.57 per 5.0 μg protein

(Davidsson et al. 2001)

αS

Newly developed bead based xMAP technology assay

CSF

Human (in vitro)

67 ng/L

94 ng/L

(Hansson et al. 2014)

IL-6

Commercial plate-based ELISA

Plasma

Human (in vitro)

1.622 ± 0.806 pg/mL

2.343 ± 1.379 pg/mL

(Wu et al. 2015)

NOS

Assayed by measuring conversion of arginine to citrulline

Microvessels

Human (in vitro)

10.0 ± 2.4 nmol/min/mg

44.7 ± 5.5 nmol/min/mg

(Dorheim et al. 1994)

GSK-3

EIA assay

Post Synaptosomal supernatant

Human (in vitro)

156.41 ± 12.07 pmol phosphate incorporated/mg protein/min

160.78 ± 29.6 pmol phosphate incorporated /mg protein/min

(Pei et al. 1997)