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Table 3 Classification accuracy and standard deviation for several kernels and their variant when plugged into the Gaussian RBF kernel

From: A survey on graph kernels

DatasetVLELSPWLWL-OAGL3
 KlinKRBFKlinKRBFKlinKRBFKlinKRBFKlinKRBFKlinKRBF
NCI164.6 ±0.167.2 ±2.866.3 ±0.171.8 ±0.373.2 ±0.379.3 ±0.485.9 ±0.186.2 ±0.186.2 ±0.286.6 ±0.270.5 ±0.276.5 ±0.4
NCI10963.6 ±0.268.9 ±1.464.9 ±0.171.4 ±0.572.7 ±0.377.6 ±0.385.9 ±0.386.0 ±0.386.2 ±0.286.4 ±0.269.3 ±0.276.0 ±0.4
PTC-FR67.9 ±0.466.9 ±0.566.8 ±0.565.2 ±1.267.1 ±2.063.7 ±2.067.1 ±1.266.8 ±1.567.8 ±1.167.0 ±1.365.5 ±0.965.0 ±1.4
PTC-MR57.8 ±0.959.4 ±1.456.7 ±1.660.5 ±1.858.8 ±2.262.0 ±1.860.4 ±1.562.7 ±2.062.6 ±1.562.7 ±1.057.4 ±1.660.4 ±1.6
PTC-FM63.9 ±0.562.6 ±0.964.5 ±0.460.5 ±1.462.7 ±1.060.2 ±1.362.8 ±1.260.9 ±0.861.6 ±1.261.7 ±1.260.2 ±3.060.7 ±0.8
PTC-MM66.6 ±0.864.7 ±0.464.1 ±1.062.7 ±1.663.3 ±1.263.2 ±0.867.8 ±2.167.7 ±1.366.4 ±1.166.3 ±1.761.4 ±1.761.3 ±1.4
MUTAG85.4 ±0.782.9 ±1.083.6 ±1.088.4 ±2.283.1 ±1.385.2 ±1.486.6 ±0.687.9 ±1.087.5 ±2.187.3 ±1.787.2 ±1.187.8 ±1.1
Mutagenicity67.0 ±0.273.9 ±0.372.4 ±0.180.3 ±0.377.4 ±0.280.1 ±0.283.6 ±0.284.5 ±0.384.2 ±0.284.7 ±0.479.8 ±0.282.7 ±0.3
AIDS99.7 ±0.099.7 ±0.099.5 ±0.099.4 ±0.099.6 ±0.099.7 ±0.099.7 ±0.099.7 ±0.099.7 ±0.099.7 ±0.099.2 ±0.199.3 ±0.1
BZR78.8 ±0.186.0 ±0.279.1 ±0.586.3 ±0.386.5 ±0.988.1 ±0.588.5 ±0.787.9 ±0.888.2 ±0.488.0 ±0.581.6 ±0.785.4 ±1.0
COX278.2 ±0.080.6 ±0.382.0 ±0.683.9 ±0.780.6 ±0.981.7 ±0.881.2 ±1.081.7 ±0.780.4 ±0.980.8 ±1.381.3 ±0.781.9 ±0.5
DHFR60.9 ±0.274.8 ±1.267.9 ±0.673.2 ±0.977.5 ±0.680.7 ±0.782.7 ±0.483.5 ±0.683.0 ±1.083.3 ±0.674.7 ±0.681.2 ±1.0
DD78.2 ±0.480.1 ±0.477.5 ±0.678.7 ±0.779.5 ±0.674.5 ±0.278.9 ±0.480.9 ±0.379.2 ±0.479.9 ±0.579.7 ±0.779.1 ±0.6
PROTEINS71.9 ±0.474.7 ±0.473.4 ±0.375.2 ±0.575.9 ±0.474.0 ±0.375.5 ±0.373.9 ±0.776.2 ±0.475.9 ±0.672.7 ±0.673.0 ±0.6
ENZYMES23.4 ±1.141.7 ±1.127.7 ±0.745.1 ±1.241.9 ±1.759.5 ±1.353.7 ±1.562.6 ±1.259.9 ±1.062.3 ±1.130.4 ±1.158.6 ±1.0
IMDB-BINARY46.3 ±0.956.5 ±0.646.0 ±0.962.6 ±1.257.3 ±0.670.2 ±0.872.9 ±0.671.3 ±1.073.1 ±0.773.5 ±0.659.4 ±0.470.1 ±0.8
IMDB-MULTI31.9 ±0.539.5 ±0.930.8 ±0.946.9 ±0.639.6 ±0.246.1 ±0.750.3 ±0.450.7 ±0.650.4 ±0.550.7 ±0.540.6 ±0.447.1 ±0.5
REDDIT-BINARY75.3 ±0.177.6 ±0.275.1 ±0.179.4 ±0.181.7 ±0.267.8 ±0.280.9 ±0.483.9 ±0.589.3 ±0.288.9 ±0.160.1 ±0.273.6 ±0.1
MSRC-988.4 ±1.387.7 ±1.092.6 ±0.990.2 ±0.791.4 ±0.889.2 ±1.090.1 ±0.889.1 ±0.990.7 ±0.890.1 ±0.791.6 ±0.791.6 ±0.9
MSRC-2189.4 ±0.390.0 ±0.589.5 ±0.387.3 ±0.489.4 ±0.637.4 ±1.289.3 ±0.689.8 ±0.490.0 ±0.690.5 ±0.490.5 ±0.785.1 ±0.6
MSRC-21C81.2 ±1.280.8 ±1.784.5 ±0.881.8 ±1.383.8 ±1.278.3 ±1.381.9 ±0.982.1 ±1.184.9 ±0.884.5 ±1.084.0 ±1.782.6 ±1.0
Tox21-AR95.9 ±0.096.4 ±0.095.9 ±0.097.5 ±0.097.1 ±0.097.5 ±0.097.9 ±0.098.0 ±0.098.0 ±0.098.0 ±0.096.4 ±0.097.6 ±0.0
Tox21-MMP84.3 ±0.086.5 ±0.184.5 ±0.089.7 ±0.286.4 ±0.190.7 ±0.292.5 ±0.193.0 ±0.292.7 ±0.192.8 ±0.187.3 ±0.191.2 ±0.2
Tox21-AHR88.4 ±0.089.1 ±0.288.6 ±0.191.4 ±0.288.4 ±0.091.9 ±0.193.4 ±0.193.7 ±0.193.5 ±0.193.6 ±0.189.7 ±0.192.8 ±0.2
Average71.274.572.276.275.674.979.680.280.580.673.877.5
  1. The highest accuracy value is highlighted in bold for each dataset