TY - CHAP AU - Adams, H. AU - Tausz, A. AU - Vejdemo-Johansson, M. ED - Hong, H. ED - Yap, C. PY - 2014 DA - 2014// TI - javaplex: A research software package for persistent (co)homology BT - Mathematical Software – ICMS 2014 PB - Springer CY - Berlin, Heidelberg ID - Adams2014 ER - TY - JOUR AU - Akimushkin, C. AU - Amancio, D. R. AU - Oliveira, O. N. J. PY - 2017 DA - 2017// TI - Text authorship identified using the dynamics of word co-occurrence networks JO - PLos ONE VL - 12 UR - https://doi.org/10.1371/journal.pone.0170527 DO - 10.1371/journal.pone.0170527 ID - Akimushkin2017 ER - TY - STD TI - Bianconi, G, Rahmede C (2017) Emergent hyperbolic network geometry. Sci Rep 7(41974). https://doi.org/10.1038/srep41974. ID - ref3 ER - TY - JOUR AU - Carlsson, G. PY - 2009 DA - 2009// TI - Topology and data JO - Bullettin AMS VL - 46 UR - https://doi.org/10.1090/S0273-0979-09-01249-X DO - 10.1090/S0273-0979-09-01249-X ID - Carlsson2009 ER - TY - JOUR AU - Carlsson, G. AU - Zomorodian, A. PY - 2009 DA - 2009// TI - The theory of multidimensional persistence JO - Discrete Comput Geom VL - 42 UR - https://doi.org/10.1007/s00454-009-9176-0 DO - 10.1007/s00454-009-9176-0 ID - Carlsson2009 ER - TY - JOUR AU - Carlsson, G. AU - Zomorodian, A. AU - Collins, A. AU - Guibas, L. J. PY - 2005 DA - 2005// TI - Persistence barcodes for shapes JO - Int J Shape Model VL - 11 UR - https://doi.org/10.1142/S0218654305000761 DO - 10.1142/S0218654305000761 ID - Carlsson2005 ER - TY - JOUR AU - Carstens, C. J. AU - Horadam, K. J. PY - 2013 DA - 2013// TI - Persistent homology of collaboration networks JO - Math Probl Eng VL - 2013 UR - https://doi.org/10.1155/2013/815035 DO - 10.1155/2013/815035 ID - Carstens2013 ER - TY - JOUR AU - Chan, J. M. AU - Carlsson, G. AU - Rabadan, R. PY - 2013 DA - 2013// TI - Topology of viral evolution JO - PNAS VL - 110 UR - https://doi.org/10.1073/pnas.1313480110 DO - 10.1073/pnas.1313480110 ID - Chan2013 ER - TY - JOUR AU - Chiang, I. J. PY - 2007 DA - 2007// TI - Discover the semantic topology in high-dimensional data JO - Expert Syst Appl VL - 33 UR - https://doi.org/10.1016/j.eswa.2006.05.033 DO - 10.1016/j.eswa.2006.05.033 ID - Chiang2007 ER - TY - JOUR AU - Courtney, O. AU - Bianconi, G. PY - 2016 DA - 2016// TI - Generalized network structures: The configuration model and the canonical ensemble of simplicial complexes JO - Phys Rev E VL - 93 UR - https://doi.org/10.1103/PhysRevE.93.062311 DO - 10.1103/PhysRevE.93.062311 ID - Courtney2016 ER - TY - JOUR AU - Eckmann, J. -. P. AU - Moses, E. PY - 2002 DA - 2002// TI - Curvature of co-links uncovers hidden thematic layers in the world wide web JO - PNAS VL - 99 UR - https://doi.org/10.1073/pnas.032093399 DO - 10.1073/pnas.032093399 ID - Eckmann2002 ER - TY - JOUR AU - Edelsbrunner, H. AU - Harer, J. PY - 2008 DA - 2008// TI - Persistent homology - a survey JO - Contemp Math VL - 453 ID - Edelsbrunner2008 ER - TY - JOUR AU - Edelsbrunner, H. AU - Letscher, D. AU - Zomorodian, A. PY - 2002 DA - 2002// TI - Topological persistence and simplification JO - Discret Comput Geom VL - 28 UR - https://doi.org/10.1007/s00454-002-2885-2 DO - 10.1007/s00454-002-2885-2 ID - Edelsbrunner2002 ER - TY - JOUR AU - Estrada, E. AU - Ross, G. PY - 2018 DA - 2018// TI - Centralities in simplicial complexes. applications to protein interaction networks JO - J Theor Biol VL - 438 UR - https://doi.org/10.1016/j.jtbi.2017.11.003 DO - 10.1016/j.jtbi.2017.11.003 ID - Estrada2018 ER - TY - JOUR AU - Ferrer-i-Cancho, R. AU - Solé, R. V. PY - 2001 DA - 2001// TI - The small world of human language JO - Proc R Soc Lond B VL - 268 UR - https://doi.org/10.1098/rspb.2001.1800 DO - 10.1098/rspb.2001.1800 ID - Ferrer-i-Cancho2001 ER - TY - JOUR AU - Garg, M. AU - Kumar, M. PY - 2018 DA - 2018// TI - Identifying influential segments from word co-occurrence networks using ahp JO - Cogn Syst Res VL - 47 UR - https://doi.org/10.1016/j.cogsys.2017.07.003 DO - 10.1016/j.cogsys.2017.07.003 ID - Garg2018 ER - TY - STD TI - Gottlieb, AD (2000) Markov transitions and the propagation of chaos. ArXiv Math E-prints. math/0001076. UR - http://arxiv.org/abs/math/0001076math/0001076 ID - ref17 ER - TY - STD TI - Gurciullo, S, et al. (2015) Complex politics: A quantitative semantic and topological analysis of uk house of commons debates. ArXiv E-prints. 1510.03797. UR - http://arxiv.org/abs/1510.03797 ID - ref18 ER - TY - JOUR AU - Horak, D. AU - Maletic, S. AU - Rajkovic, M. PY - 2009 DA - 2009// TI - Persistent homology of complex networks JO - J Stat Mech Theory Exp VL - 3 ID - Horak2009 ER - TY - JOUR AU - Jenssen, T. -. K. AU - Laegreid, A. AU - Komorowski, J. AU - Hovig, E. PY - 2001 DA - 2001// TI - A literature network of human genes for high-throughput analysis of gene expression JO - Nat Genet VL - 28 ID - Jenssen2001 ER - TY - CHAP AU - Jo, Y. AU - Hopcroft, J. E. AU - Lagoze, C. PY - 2011 DA - 2011// TI - The web of topics: Discovering the topology of topic evolution in a corpus BT - Proceedings of the 20th International Conference on World Wide Web, March 28 - April 01, 2011, Hyberabad, India PB - ACM CY - New York ID - Jo2011 ER - TY - STD TI - Lazer, D, Mergel I, Friedman A (2009) Co-citation of prominent social network articles in sociology journals: The evolving canon. Connections 29(1). ID - ref22 ER - TY - JOUR AU - Mamuye, A. L. AU - Rucco, M. AU - Tesei, L. AU - Merelli, E. PY - 2016 DA - 2016// TI - Persistent homology analysis of rna JO - Mol Based Math Biol VL - 4 ID - Mamuye2016 ER - TY - STD TI - Mantoiu, M, Purice R, Richard S (2004) Twisted crossed products and magnetic pseudodifferential operators. ArXiv Math Phys E-prints. math-ph/0403016. UR - http://arxiv.org/abs/math-ph/0403016 ID - ref24 ER - TY - STD TI - Mullen, EK, et al. (2014) Gene co-citation networks associated with worker sterility in honey bees. BMC Syst Biol 8(38). https://doi.org/10.1186/1752-0509-8-38. ID - ref25 ER - TY - STD TI - Otter, N, Porter MA, Tillmann U, Grindrod P, Harrington H (2017) A roadmap for the computation of persistent homology. EPJ Data Sci 6(17). https://doi.org/10.1140/epjds/s13688-017-0109-5. ID - ref26 ER - TY - CHAP AU - Pal, S. AU - Moore, T. J. AU - Ramanathan, R. AU - Swami, A. ED - Gonçalves, B. ED - Menezes, R. S. R. ED - Zlatic, V. PY - 2017 DA - 2017// TI - Comparative topological signatures of growing collaboration networks BT - Proceedings of the 8th Conference on Complex Networks CompleNet 2017 PB - Stoneham: Butterworth-Heinemann CY - Cham ID - Pal2017 ER - TY - STD TI - Patania, A, Petri G, Vaccarino F (2017a) The shape of collaborations. EPJ Data Sci 6(18). https://doi.org/10.1140/epjds/s13688-017-0114-8. ID - ref28 ER - TY - STD TI - Patania, A, Petri G, Vaccarino F (2017b) Topological analysis of data. EPJ Data Sci 6(7). https://doi.org/10.1140/epjds/s13688-017-0104-x. ID - ref29 ER - TY - STD TI - Petri, G, Expert P, Turkheimer F, Carhart-Harris R, Nutt D, Hellyer PJ, Vaccarino F (2014) Homological scaffolds of brain functional networks. J R Soc Interface 11(20140873). https://doi.org/10.1098/rsif.2014.0873. ID - ref30 ER - TY - STD TI - Petri, G, Scolamiero M, I D, F V (2013) Topological strata of weighted complex networks. PLoS ONE 8(6). https://doi.org/10.1371/journal.pone.0066506. ID - ref31 ER - TY - JOUR AU - Radhakrishnan, S. AU - Erbis, S. AU - Isaacs, J. A. AU - Kamarthi, S. PY - 2017 DA - 2017// TI - Novel keyword co-occurrence network-based methods to foster systematic reviews of scientific literature JO - PLos ONE VL - 12 ID - Radhakrishnan2017 ER - TY - CHAP AU - Sami, I. R. AU - Farrahi, K. PY - 2017 DA - 2017// TI - A simplified topological representation of th text for local and global context BT - Proceedings of the 2017 ACM on Multimedia Conference, Mountain View, California, USA PB - ACM CY - New York UR - https://doi.org/10.1145/3123266.3123330 DO - 10.1145/3123266.3123330 ID - Sami2017 ER - TY - JOUR AU - Serrano, M. A. AU - Boguña, M. AU - Vespignani, A. PY - 2009 DA - 2009// TI - Extracting the multiscale backbone of complex weighted networks JO - PNAS VL - 106 UR - https://doi.org/10.1073/pnas.0808904106 DO - 10.1073/pnas.0808904106 ID - Serrano2009 ER - TY - STD TI - Slater, PB (2009) A two-stage algorithm for extracting the multiscale backbone of complex weighted networks. PNAS 106(26). https://doi.org/10.1073/pnas.0904725106. ID - ref35 ER - TY - STD TI - Stolz, BJ, Harrington HA, Porter MA (2017) Persistent homology of time-dependent functional networks constructed from coupled time series. Chaos 27(047410). https://doi.org/10.1063/1.4978997. ID - ref36 ER - TY - STD TI - Su, H-N, Lee P-C (2010) Mapping knowledge structure by keyword co-occurrence: a first look at journal papers in technology foresight. Scientometrics 85:65–79. https://doi.org/10.1007/s11192-010-0259-8. ID - ref37 ER - TY - STD TI - Taylor, D, et al. (2015) Topological data analysis of contagion maps for examining spreading processes on networks. Nat Commun 6(7723). https://doi.org/10.1038/ncomms8723. ID - ref38 ER - TY - JOUR AU - Wang, X. AU - Zhang, X. AU - Xu, S. PY - 2011 DA - 2011// TI - Patent co-citation networks of fortune 500 companies JO - Scientometrics VL - 88 UR - https://doi.org/10.1007/s11192-011-0414-x DO - 10.1007/s11192-011-0414-x ID - Wang2011 ER - TY - STD TI - Yau, S-T (2006) Perspectives on geometric analysis. ArXiv Math e-prints. math/0602363. UR - http://arxiv.org/abs/math/0602363 ID - ref40 ER - TY - JOUR AU - Young, J. -. C. AU - Petri, G. AU - Vaccarino, F. AU - Patania, A. PY - 2017 DA - 2017// TI - Construction of and efficient sampling from the simplicial configuration model JO - Phys Rev E VL - 96 UR - https://doi.org/10.1103/PhysRevE.96.032312 DO - 10.1103/PhysRevE.96.032312 ID - Young2017 ER - TY - CHAP AU - Wagner, H. ED - Ferri, M. ED - Frosini, P. ED - Landi, C. ED - Cerri, A. ED - Di Fabio, B. PY - 2012 DA - 2012// TI - Computational topology in text mining BT - Computational Topology in Image Context PB - Springer CY - Berlin, Heidelberg UR - https://doi.org/10.1007/978-3-642-30238-1_8 DO - 10.1007/978-3-642-30238-1_8 ID - Wagner2012 ER - TY - JOUR AU - Waldschmidt, M. PY - 2004 DA - 2004// TI - Open diophantine problems JO - Mosc Math J VL - 4 ID - Waldschmidt2004 ER - TY - STD TI - Wu, Z, Menichetti G, Rahmede C, Bianconi G (2015) Emergent complex network geometry. Sci Rep 5(10073). https://doi.org/10.1038/srep10073. ID - ref44 ER - TY - JOUR AU - Zhang, J. AU - Xie, J. AU - Hou, W. AU - Tu, X. AU - Xu, J. PY - 2012 DA - 2012// TI - Mapping the knowledge structure of research on patient ahderence: knowledge domain visualization based co-word analysis and social network analysis JO - PLoS ONE VL - 7 UR - https://doi.org/10.1371/journal.pone.0034497 DO - 10.1371/journal.pone.0034497 ID - Zhang2012 ER - TY - JOUR AU - Zomorodian, A. AU - Carlsson, G. PY - 2005 DA - 2005// TI - Computing persistent homology JO - Discret Comput Geom VL - 33 UR - https://doi.org/10.1007/s00454-004-1146-y DO - 10.1007/s00454-004-1146-y ID - Zomorodian2005 ER -