Improved prediction of missing protein interactome links via anomaly detection

Applied Network Science

Table 5 Classification comparison Under different metrics using balanced random sampling

Network	Classifier	Without anomaly detection			With anomaly detection
		Accuracy	F-measure	AUC	Accuracy	F-measure	AUC
Arabidopsis	SVM	92.99	92.70	92.99	97.01	97.09	97.01
thaliana	C5.0*	99.41	99.76	99.41	99.41	99.41	99.41
	KNN	94.81	94.60	94.81	98.43	98.45	98.43
	NB	62.55	41.18	62.55	86.77	85.53	86.77
Caenorhabditis	SVM	87.02	85.18	87.02	93.60	93.97	93.60
elegans	C5.0*	97.77	97.74	97.77	97.95	97.97	97.95
	KNN	92.63	92.33	92.63	96.20	96.32	96.20
	NB	60.32	41.53	60.32	66.90	56.98	66.90
Mus musculus	SVM	93.71	93.49	93.71	96.64	96.75	96.64
	C5.0	98.63	98.62	98.63	99.37	99.37	99.37
	KNN	93.14	92.74	93.14	98.38	98.41	98.38
	NB	59.67	33.26	59.67	78.60	74.78	78.60
Rattus	SVM	94.61	94.35	94.61	98.56	98.57	98.56
norvegicus	C5.0	90.75	89.84	90.75	99.40	99.40	99.40
	KNN	86.20	84.04	86.20	99.37	99.37	99.37
	NB	67.42	51.85	67.42	82.73	80.13	82.73